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1

Analysis of resistance to witches’ broom disease ( Moniliophthora perniciosa ) in flower cushions of Theobroma cacao in a segregating population

Silva, D. V., Araújo, I. S., Branco, S. M. J., Aguilar-Vildoso, C. I., Lopes, U. V., Marelli, J. P., Motamayor, J. C., Royaert, S., Rebouças, R. C., Corrêa, R. X.

Journal:

Plant Pathology

Year:

2014

Language:

english

File:

PDF, 229 KB

english, 2014

2

Phenotypic Description of Theobroma cacao L. for Yield and Vigor Traits From 34 Hybrid Families in Costa Rica Based on the Genetic Basis of the Parental Population

Mustiga, Guiliana M., Gezan, Salvador A., Phillips-Mora, Wilbert, Arciniegas-Leal, Adriana, Mata-Quirós, Allan, Motamayor, Juan C.

Journal:

Frontiers in Plant Science

Year:

2018

Language:

english

File:

PDF, 3.10 MB

english, 2018

3

Mapping of a Major QTL for Ceratocystis Wilt Disease in an F1 Population of Theobroma cacao

Fernandes, Luciel dos Santos, Royaert, Stefan, Corrêa, Fábio M., Mustiga, Guiliana M., Marelli, Jean-Philippe, Corrêa, Ronan X., Motamayor, Juan C.

Journal:

Frontiers in Plant Science

Year:

2018

Language:

english

File:

PDF, 2.75 MB

english, 2018

4

Corrigendum: A Larger Chocolate Chip—Development of a 15K Theobroma cacao L. SNP Array to Create High-Density Linkage Maps

Livingstone III, Donald, Stack, Conrad, Mustiga, Guiliana M., Rodezno, Dayana C., Suarez, Carmen, Amores, Freddy, Feltus, Frank A., Mockaitis, Keithanne, Cornejo, Omar E., Motamayor, Juan C.

Journal:

Frontiers in Plant Science

Year:

2018

Language:

english

File:

PDF, 133 KB

english, 2018

5

Cacao domestication I: the origin of the cacao cultivated by the Mayas

Motamayor, J C, Risterucci, A M, Lopez, P A, Ortiz, C F, Moreno, A, Lanaud, C

Journal:

Year:

2002

Language:

english

File:

PDF, 129 KB

english, 2002

6

Genetic Parameters and the Impact of Off-Types for Theobroma cacao L. in a Breeding Program in Brazil

DuVal, Ashley, Gezan, Salvador A., Mustiga, Guiliana, Stack, Conrad, Marelli, Jean-Philippe, Chaparro, José, Livingstone, Donald, Royaert, Stefan, Motamayor, Juan C.

Journal:

Frontiers in Plant Science

Year:

2017

Language:

english

File:

PDF, 1.27 MB

english, 2017

7

The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color

Motamayor, Juan C, Mockaitis, Keithanne, Schmutz, Jeremy, Haiminen, Niina, III, Donald, Cornejo, Omar, Findley, Seth D, Zheng, Ping, Utro, Filippo, Royaert, Stefan, Saski, Christopher, Jenkins, Jerry,

Journal:

Year:

2013

Language:

english

File:

PDF, 10.04 MB

english, 2013

8

Genetic differentiation and intrinsic genomic features explain variation in recombination hotspots among cocoa tree populations

Schwarzkopf, Enrique J., Motamayor, Juan C., Cornejo, Omar E.

Journal:

Year:

2020

File:

PDF, 1.61 MB

2020

9

Making a chocolate chip: development and evaluation of a 6K SNP array for Theobroma cacao

Livingstone, D., Royaert, S., Stack, C., Mockaitis, K., May, G., Farmer, A., Saski, C., Schnell, R., Kuhn, D., Motamayor, J. C.

Journal:

Year:

2015

Language:

english

File:

PDF, 908 KB

english, 2015

10

Optimization of a SNP assay for genotypingTheobroma cacaounder field conditions

Donald S. Livingstone III, Barbie Freeman, Juan Carlos Motamayor, Raymond J. Schnell, Stefan Royaert, Jemmy Takrama, Alan W. Meerow, David N. Kuhn

Journal:

Molecular Breeding

Year:

2012

Language:

english

File:

PDF, 573 KB

english, 2012

11

Microsatellite Fingerprinting of the USDA-ARS Tropical Agriculture Research Station Cacao ( L.) Germplasm Collection

Irish, Brian M., Goenaga, Ricardo, Zhang, Dapeng, Schnell, Raymond, Brown, J. Steve, Motamayor, Juan Carlos

Journal:

Year:

2010

Language:

english

File:

PDF, 1.21 MB

english, 2010

12

A genetically anchored physical framework forTheobroma cacaocv. Matina 1-6

Christopher A Saski, Frank A Feltus, Margaret E Staton, Barbara P Blackmon, Stephen P Ficklin, David N Kuhn, Raymond J Schnell, Howard Shapiro, Juan Carlos Motamayor

Journal:

Year:

2011

Language:

english

File:

PDF, 748 KB

english, 2011

13

Assessing microsatellite linkage disequilibrium in wild, cultivated, and mapping populations ofTheobroma cacaoL. and its impact on association mapping

Stack, J. Conrad, Royaert, Stefan, Gutiérrez, Osman, Nagai, Chifumi, Holanda, Ioná Santos Araújo, Schnell, Raymond, Motamayor, Juan-Carlos

Journal:

Tree Genetics & Genomes

Year:

2015

Language:

english

File:

PDF, 1.58 MB

english, 2015

14

Genetic Diversity in Cocoa (Theobroma cacao L.) Germplasm Collection from Ghana

S. Y. Opoku, R. Bhattacharjee, M. Kolesnikova-allen, J. C. Motamayor, R. Schnell, I. Ingelbrecht, L. Enu-kwesi, Y. Adu-ampomah

Year:

2007

Language:

english

File:

PDF, 1.35 MB

english, 2007

15

Mapping QTLs for Resistance to Frosty Pod and Black Pod Diseases and Horticultural Traits in L.

Brown, J. Steven, Phillips-Mora, Wilbert, Power, Emilio J., Krol, Cheryl, Cervantes-Martinez, Cuauhtemoc, Motamayor, Juan Carlos, Schnell, Raymond J.

Journal:

Year:

2007

Language:

english

File:

PDF, 1.25 MB

english, 2007

16

Environment and pathogens shape local and regional adaptations to climate change in the chocolate tree, Theobroma cacao L

Nelson, Joel T., Motamayor, Juan C., Cornejo, Omar E.

Journal:

Molecular Ecology

Year:

2020

File:

PDF, 27.92 MB

2020

17

A Composite Linkage Map from Three Crosses Between Commercial Clones of Cacao,Theobroma cacaoL.

J. Steven Brown, Robert T. Sautter, Cecile T. Olano, James W. Borrone, David N. Kuhn, J. C. Motamayor, Raymond J. Schnell

Journal:

Tropical Plant Biology

Year:

2008

Language:

english

File:

PDF, 452 KB

english, 2008

18

Optimization of somatic embryogenesis procedure for commercial clones of Theobroma cacao L.

Garcia, Claudia, Corrêa, Fabio, Findley, Seth, Almeida, Alex-Alan, Costa, Marcio, Motamayor, Juan Carlos, Schnell, Ray, Marelli, Jean-Philippe

Journal:

AFRICAN JOURNAL OF BIOTECHNOLOGY

Year:

2016

Language:

english

File:

PDF, 857 KB

english, 2016

19

Low-cost assembly of a cacao crop genome is able to resolve complex heterozygous bubbles

Morrissey, Joe, Stack, J. Conrad, Valls, Rebecca, Motamayor, Juan Carlos

Journal:

Horticulture Research

Year:

2019

Language:

english

File:

PDF, 705 KB

english, 2019

20

Switch(swi1), anArabidopsis thalianamutant affected in the female meiotic switch

J. C. Motamayor, D. Vezon, C. Bajon, A. Sauvanet, O. Grandjean, M. Marchand, N. Bechtold, G. Pelletier, C. Horlow

Journal:

Plant Reproduction

Year:

2000

Language:

english

File:

PDF, 733 KB

english, 2000

21

Genetic diversity and structure of farm and GenBank accessions of cacao (Theobroma cacaoL.) in Cameroon revealed by microsatellite markers

Ives Bruno M. Efombagn, Juan C. Motamayor, Olivier Sounigo, Albertus B. Eskes, Salomon Nyassé, Christian Cilas, Ray Schnell, Maria J. Manzanares-Dauleux, Maria Kolesnikova-Allen

Journal:

Tree Genetics & Genomes

Year:

2008

Language:

english

File:

PDF, 381 KB

english, 2008

22

Geographic and Genetic Population Differentiation of the Amazonian Chocolate Tree (Theobroma cacao L)

Motamayor, Juan C., Lachenaud, Philippe, da Silva e Mota, Jay Wallace, Loor, Rey, Kuhn, David N., Brown, J. Steven, Schnell, Raymond J., Borevitz, Justin O.

Journal:

Year:

2008

Language:

english

File:

PDF, 236 KB

english, 2008

23

Megasporogenesis inArabidopsis thalianaL.: an ultrastructural study

C. Bajon, C. Horlow, J. C. Motamayor, A. Sauvanet, D. Robert

Journal:

Plant Reproduction

Year:

1999

Language:

english

File:

PDF, 2.18 MB

english, 1999

24

Analysis of molecular diversity inCrinipellis perniciosawith AFLP markers

Randy C. Ploetz, Raymond J. Schnell, Zhentu Ying, Qi Zheng, Cecile T. Olano, Juan C. Motamayor, Elizabeth S. Johnson

Journal:

European Journal of Plant Pathology

Year:

2005

Language:

english

File:

PDF, 290 KB

english, 2005

25

Conversion of Microsatellite Markers to Single Nucleotide Polymorphism (SNP) Markers for Genetic Fingerprinting of Theobroma cacao L.

Dadzie, Abu M., Livingstone, Donald S., Opoku, Stephen Y., Takrama, Jemmy, Padi, Francis, Offei, Samuel K., Danquah, Eric Y., Motamayor, Juan Carlos, Schnell, Raymond J., Kuhn, David N.

Journal:

Journal of Crop Improvement

Year:

2013

Language:

english

File:

PDF, 195 KB

english, 2013

26

Genetic identity and diversity of Nigerian cacao genebank collections verified by single nucleotide polymorphisms (SNPs): a guide to field genebank management and utilization

Olasupo, Festus O., Adewale, Daniel B., Aikpokpodion, Peter O., Muyiwa, Anna A., Bhattacharjee, Ranjana, Gutierrez, Osman A., Motamayor, Juan Carlos, Schnell, Raymond J., Ebai, Sona, Zhang, Dapeng

Journal:

Tree Genetics & Genomes

Year:

2018

Language:

english

File:

PDF, 1.45 MB

english, 2018

27

A Larger Chocolate Chip—Development of a 15K Theobroma cacao L. SNP Array to Create High-Density Linkage Maps

Livingstone, Donald, Stack, Conrad, Mustiga, Guiliana M., Rodezno, Dayana C., Suarez, Carmen, Amores, Freddy, Feltus, Frank A., Mockaitis, Keithanne, Cornejo, Omar E., Motamayor, Juan C.

Journal:

Frontiers in Plant Science

Year:

2017

Language:

english

File:

PDF, 3.21 MB

english, 2017

28

Mapping quantitative trait loci for bean traits and ovule number in Theobroma cacao L.

Clement, D, Risterucci, A M, Motamayor, J C, N'Goran, J, Lanaud, C

Journal:

Year:

2003

File:

PDF, 643 KB

2003

29

CURRENT CHALLENGES OF TROPICAL TREE CROP IMPROVEMENT: INTEGRATING GENOMICS INTO AN APPLIED CACAO BREEDING PROGRAM

Schnell, R.J., Brown, J.S., Kuhn, D.N., Cervantes-Martinez, C., Borrone, J.W., Phillips, W., Johnson, E., Monteverde-Penso, E.J., Motamayor, J.C., Amores, F., Lopes, U.

Journal:

Acta Horticulturae

Year:

2007

Language:

english

File:

PDF, 335 KB

english, 2007

30

Development of single nucleotide polymorphism markers inTheobroma cacaoand comparison to simple sequence repeat markers for genotyping of Cameroon clones

Donald S. Livingstone, Juan Carlos Motamayor, Raymond J. Schnell, Kathleen Cariaga, Barbie Freeman, Alan W. Meerow, J. Steven Brown, David N. Kuhn

Journal:

Molecular Breeding

Year:

2011

Language:

english

File:

PDF, 436 KB

english, 2011

31

The impact of SNP fingerprinting and parentage analysis on the effectiveness of variety recommendations in cacao

Padi, Francis K., Ofori, Atta, Takrama, Jemmy, Djan, Esther, Opoku, Stephen Y., Dadzie, Abu M., Bhattacharjee, Ranjana, Motamayor, Juan Carlos, Zhang, Dapeng

Journal:

Tree Genetics & Genomes

Year:

2015

Language:

english

File:

PDF, 1.01 MB

english, 2015

32

Cacao domestication II: progenitor germplasm of the Trinitario cacao cultivar

Motamayor, J C, Risterucci, A M, Heath, M, Lanaud, C

Journal:

Year:

2003

Language:

english

File:

PDF, 131 KB

english, 2003

33

Mapping QTL for yield components, vigor, and resistance to Phytophthora palmivora in Theobroma cacao L.

Clement, D, Risterucci, A M, Motamayor, J C, N'Goran, J, Lanaud, C

Journal:

Year:

2003

File:

PDF, 313 KB

2003

34

EvaluatingTheobroma grandiflorumfor comparative genomic studies withTheobroma cacao

David N. Kuhn, Antonio Figueira, Uilson Lopes, Juan Carlos Motamayor, Alan W. Meerow, Kathleen Cariaga, Barbie Freeman, Donald S. Livingstone, Raymond J. Schnell

Journal:

Tree Genetics & Genomes

Year:

2010

Language:

english

File:

PDF, 182 KB

english, 2010

35

Genetic Structure and Gene Flow among South Florida Populations ofIris hexagonaWalt. (Iridaceae) Assessed with 19 Microsatellite DNA Loci

Alan W. Meerow, Michael Gideon, David N. Kuhn, Juan Carlos Motamayor, and Kyoko Nakamura

Journal:

International Journal of Plant Sciences

Year:

2007

Language:

english

File:

PDF, 1.33 MB

english, 2007

36

Single-strand conformation polymorphism analysis of candidate genes for reliable identification of alleles by capillary array electrophoresis

David N. Kuhn, James Borrone, Alan W. Meerow, Juan C. Motamayor, J. Steven Brown, Raymond J. Schnell

Journal:

ELECTROPHORESIS

Year:

2005

Language:

english

File:

PDF, 461 KB

english, 2005

37

Relations between several traits linked to sexual plant reproduction inTheobroma cacaoL.: number of ovules per ovary, number of seeds per pod, and seed weight

Christian Cilas, Regina Machado, Juan-Carlos Motamayor

Journal:

Tree Genetics & Genomes

Year:

2010

Language:

english

File:

PDF, 215 KB

english, 2010

38

Comparative evaluation of total RNA extraction methods in Theobroma cacao using shoot apical meristems

Silva, D.V., Branco, S.M.J., Holanda, I.S.A., Royaert, S., Motamayor, J.C., Marelli, J.P., Corrêa, R.X.

Journal:

Genetics and Molecular Research

Year:

2016

Language:

english

File:

PDF, 605 KB

english, 2016

39

Identification and mapping of conserved ortholog set (COS) II sequences of cacao and their conversion to SNP markers for marker-assisted selection inTheobroma cacaoand comparative genomics studies

David N. Kuhn, Don Livingstone, Dorrie Main, Ping Zheng, Chris Saski, F. Alex Feltus, Keithanne Mockaitis, Andrew D. Farmer, Gregory D. May, Raymond J. Schnell, Juan C. Motamayor

Journal:

Tree Genetics & Genomes

Year:

2012

Language:

english

File:

PDF, 457 KB

english, 2012

40

A computer simulation study on the number of loci and trees required to estimate genetic variability in cacao (Theobroma cacaoL.)

Cuauhtemoc Cervantes-Martinez, J. Steven Brown, Raymond Schnell, Juan C. Motamayor, Alan W. Meerow, Dapeng Zhang

Journal:

Tree Genetics & Genomes

Year:

2006

Language:

english

File:

PDF, 489 KB

english, 2006

41

Microsatellite markers developed from Theobroma cacao L. expressed sequence tags

JAMES W. BORRONE, J. STEVEN BROWN, DAVID N. KUHN, JUAN C. MOTAMAYOR, RAYMOND J. SCHNELL

Journal:

Molecular Ecology Resources

Year:

2007

Language:

english

File:

PDF, 93 KB

english, 2007

42

Population Structure and Molecular Characterization of Nigerian Field Genebank Collections of Cacao, Theobroma cacao L.

Aikpokpodion, P. O., Kolesnikova-Allen, M., Adetimirin, V. O., Guiltinan, M. J., Eskes, A. B., Motamayor, J.-C., Schnell, R. J.

Journal:

Silvae Genetica

Language:

english

File:

PDF, 1.40 MB

english

43

Genetic diversity, conservation, and utilization ofTheobroma cacaoL.: genetic resources in the Dominican Republic

Boza, Edward J., Irish, Brian M., Meerow, Alan W., Tondo, Cecile L., Rodríguez, Orlando A., Ventura-López, Marisol, Gómez, Jaime A., Moore, J. Michael, Zhang, Dapeng, Motamayor, Juan Carlos, Schnell,

Journal:

Genetic Resources and Crop Evolution

Year:

2013

Language:

english

File:

PDF, 471 KB

english, 2013

44

Development of a Marker Assisted Selection Program for Cacao

Schnell, R. J., Kuhn, D. N., Brown, J. S., Olano, C. T., Phillips-Mora, W., Amores, F. M., Motamayor, J. C.

Journal:

Year:

2007

Language:

english

File:

PDF, 398 KB

english, 2007

45

SSCP markers provide a useful alternative to microsatellites in genotyping and estimating genetic diversity in populations and germplasm collections of plant specialty crops

David N. Kuhn, Juan Carlos Motamayor, Alan W. Meerow, James W. Borrone, Raymond J. Schnell

Journal:

ELECTROPHORESIS

Year:

2008

Language:

english

File:

PDF, 438 KB

english, 2008

46

The Criollo cacao tree (Theobroma cacao L.): a review

Lachenaud, P., Motamayor, J. C.

Journal:

Genetic Resources and Crop Evolution

Year:

2017

Language:

english

File:

PDF, 759 KB

english, 2017

47

Rationale for reconsidering current regulations restricting use of hybrids in orange juice

Stover, Ed, Gmitter, Frederick G., Grosser, Jude, Baldwin, Elizabeth, Wu, Guohong Albert, Bai, Jinhe, Wang, Yu, Chaires, Peter, Motamayor, Juan Carlos

Journal:

Horticulture Research

Year:

2020

Language:

english

File:

PDF, 549 KB

english, 2020

48

Genetic diversity assessment of sub-samples of cacao,Theobroma cacaoL. collections in West Africa using simple sequence repeats marker

Peter O. Aikpokpodion, Juan C. Motamayor, Victor O. Adetimirin, Yaw Adu-Ampomah, Ivan Ingelbrecht, Albertus B. Eskes, Raymond J. Schnell, Maria Kolesnikova-Allen

Journal:

Tree Genetics & Genomes

Year:

2009

Language:

english

File:

PDF, 344 KB

english, 2009

49

Identification of marker-trait associations for self-compatibility in a segregating mapping population ofTheobroma cacaoL.

Stefan Royaert, Wilbert Phillips-Mora, Adriana M. Arciniegas Leal, Kathleen Cariaga, James Steven Brown, David N. Kuhn, Raymond J. Schnell, Juan Carlos Motamayor

Journal:

Tree Genetics & Genomes

Year:

2011

Language:

english

File:

PDF, 352 KB

english, 2011

50

Parentage analysis and outcrossing patterns in cacao (Theobroma cacao L.) farms in Cameroon

Efombagn, M I B, Sounigo, O, Eskes, A B, Motamayor, J C, Manzanares-Dauleux, M J, Schnell, R, Nyassé, S

Journal:

Year:

2009

Language:

english

File:

PDF, 130 KB

english, 2009

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